a browser for alignment results
browser
summarize frequency of base substitution
base
postional statistics for alignments
position
display micro-homology diagram
MMEJ
plot pie diagram of mutation types
classify
plot histogram of alignment properties
distribution
plot pairwise relationship of selected property
pairwise
plot insertion triangle diagram, height for count, width for insertion length
polygon
deletion arc diagram, weight for count, width for deletion length
arc
plot kmer frequency in sgRNA
kmer
read count to display
Display count
alignments
frequency of base substitution
display mode of positional plot
display mode
histgram base
histgram indel
read base A
read base C
read base G
read base T
read match
read snp
logo probability
logo bits
logo custom
positional plot of reference1
positional plot of reference2
reference index to analyze micro-homology
reference id
!repeat count over all microhomology positions, or !separate count evenly
display mode
repeat
separate
minimal micro-homology length to display
micro-homology length threshold
micro-homology diagram
discriminate templated andom insertion
discriminate templated\random insertion
pie diagram of mutation types
properties to hist, multiple properties are supported
what
score
cut1
cut2
ref1Len
ref2Len
ref1End
ref2Start
upInsert
downInsert
randInsert
templatedInsert
insert
upDelete
downDelete
delete
use continuous\discrete histogram
mode
continuous
discrete
histogram of alignment properties
x-axis property
x
score
cut1
cut2
ref1Len
ref2Len
ref1End
ref2Start
upInsert
downInsert
randInsert
templatedInsert
insert
upDelete
downDelete
delete
y-axis property
y
score
cut1
cut2
ref1Len
ref2Len
ref1End
ref2Start
upInsert
downInsert
randInsert
templatedInsert
insert
upDelete
downDelete
delete
choose identity\log10 scale for x-axis
x scale
identity
log10
choose identity\log10 scale for y-axis
y scale
identity
log10
smooth method
method
auto
lm
glm
gam
loess
span for smooth method
span
pairwise relationship of selected property
insertion triangle diagram of reference1
insertion triangle diagram of reference2
deletion arc diagram of reference1
deletion arc diagram of reference2
sgRNA file
sgRNA file
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targeted sequences mutation type
edit target
templated insertion
random insertion
insertion
deletion
templated indel
indel
wild type
lower bound range of sgRNA to count kmer
kmer lower bound
upper bound range of sgRNA to count kmer
kmer upper bound
kmer frequency in sgRNA